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Table 3 Nitrite reductase (nirK) genes found in bulk assembly of pooled rhizosphere samples

From: Xander: employing a novel method for efficient gene-targeted metagenomic assembly

Sample Corn Miscanthus Switchgrass
File size (GB) 349 325 277
Data size (Gbp) 293 275 233
# protein contig clustersa 41 37 39
# OTUs at 95 % aa identity 38 33 34
Median length (aa) 131 115 130
Max length (aa) 234 252 301
Median % aa identityb 75.6 79.6 73.3
Max % aa identityb 95.1 94.3 92.1
# reads covering kmers 105 123 106
Gene abundance 0.25 0.25 0.3
  1. aNumber of protein contig clusters at 99 % aa identity
  2. bPercent identity to nearest reference sequence