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Table 2 Comparison between Xander and SAT assembly of ribosomal protein L2 (rplB) genes from HMP-defined community data

From: Xander: employing a novel method for efficient gene-targeted metagenomic assembly

Tool SAT Xandera
# contigs 4 6
# members covered 3 4
Median gene coverageb (%) 75.7 94.6
Max gene coverageb (%) 79.9 100
Median % nucleotide identity 97.8 99.8
Max % nucleotide identity 99.8 100
  1. aXander: kmer length of 45, prune 20, count 1 graph
  2. bGene coverage: length of the contigs compared to the closest defined community members