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Table 1 Percent of vertices opened with pruning compared to no pruning with the corresponding length and count

From: Xander: employing a novel method for efficient gene-targeted metagenomic assembly

Prune cutoff/kmer length Length 30 Length 45
Count 1a Count 2b Count 1a Count 2b
No pruning (# opened * 106) 2325 55.8 17.7 9.2
Prune 5 (% opened) 1.55 16.53 NA NA
Prune 10 (% opened) 2.66 25.09 NA NA
Prune 15 (% opened) 6.34 29.28 NA NA
Prune 20 (% opened) 11.58 31.86 10.7 6.5
  1. aCount 1: de Bruijn graph requiring kmers with minimum abundance of 1 in the reads
  2. bCount 2: de Bruijn graph requiring kmers with minimum abundance of 2 in the reads