Primer name | Primer sequence | Target group/specificity | Reference |
---|---|---|---|
Forward primers | |||
27fa | AGAGTTTGATCCTGGCTCAG | Universal | |
27f-YMb | AGAGTTTGATYMTGGCTCAG | Universal | Satokari et al. [35] |
27f-Chlc | AGAATTTGATCTTGGTTCAG | Universal/Chlamydiales | Frank et al. [32] |
27f-Borc | AGAGTTTGATCCTGGCTTAG | Universal/Borrelia | Frank et al. [32] |
27f-Bifc | AGGGTTCGATTCTGGCTCAG | Universal/Bifidobacteriales | Frank et al. [32] |
27f-Atoc | AGAGTTCGATCCTGGCTCAG | Universal/Atopobium group | Frank et al. [32] |
Bif164-f | GGGTGGTAATGCCGGATG | Bifidobacteria | Satokari et al. [35] |
Reverse primersd | |||
Bif662-r | CCACCGTTACACCGGGAA | Bifidobacteria | Satokari et al. [35] |
534r | 5′ ATTACCGCGGCTGCTGG | Universal | Muyzer et al. [55] |
Q-PCR primerse | |||
Bif spp for | TCGCGTCYGGTGTGAAAG | Bifidobacteria | Rinttilä et al. [56] |
Bif spp rev | CCACATCCAGCRTCCAC | Bifidobacteria | Rinttilä et al. [56] |
UniF | GTGSTGCAYGGYYGTCGTCA | Universal | Fuller et al. [57] |
UniR | ACGTCRTCCMCNCCTTCCTC | Universal | Fuller et al. [57] |
Bac303F | GAAGGTCCCCCACATTG | Bacteroides spp. | Bartosch et al. [58] |
Bfr-Fmrev | CGCKACTTGGCTGGTTCAG | Bacteroides spp. | Ramirez-Farias et al. [51] |
Erec482F | CGGTACCTGACTAAGAAGC | Cluster XIVa | Rinttilä et al. [56] |
Erec870R | AGTTTYATTCTTGCGAACG | Cluster XIVa | Rinttilä et al. [56] |