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Table 1 OTUs removed from sequencing data prior to biostatical analysis

From: Deriving accurate microbiota profiles from human samples with low bacterial content through post-sequencing processing of Illumina MiSeq data

Genus

OTU identity

Achromobacter

JF925009

Acidovorax

JN869209, HQ681993

Bergeyella

New. CleanUp. ReferenceOTU46637

Brevundimonas a

EF600592

Candidatus Planktoluna

FN668204

Cellulosimicrobium

New. CleanUp. ReferenceOTU1526

Chryseobacterium a

New. ReferenceOTU87, New. CleanUp. ReferenceOTU40460, New. CleanUp. ReferenceOTU30994, AY46848

Clavibacter

New. ReferenceOTU27

Devosia

AY162048

Flavobacterium

New. ReferenceOTU91, New. CleanUp. ReferenceOTU22231

Gelidibacter

New. CleanUp. ReferenceOTU10780

Janthinobacterium

EU801443

Mesorhizobium

DQ228360

Ochrobactrum

DQ860022

Pedobacter

New. CleanUp. ReferenceOTU91

Pelomonas a

JF733429, FJ269077

Phyllobacterium a

GQ255500

Pseudomonas a

JN187532, JF970596, GU272272, FJ347714, EF515711

Ralstonia a

GU940710

Rhizobium

GQ472936

Rhodanobacter

New. CleanUp. ReferenceOTU3920

Sphingomonas

EF098188

Stenotrophomonas

FJ184356, AY373393

Terrimonas

New. CleanUp. ReferenceOTU20538

Turicibacter

AY953239

Undibacterium

GU940681

Variovorax a

GU731299, GU272259

  1. aIndicates contaminant OTUs detected in the DNA extraction negative controls. Sequences corresponding to OTU identities are included in Additional file 2 (filtered_contaminants.fna). Where accession numbers are given for OTU identities, the representative sequence from our dataset is 97% similar to the actual sequencing pertaining to that accession number.