Figure 5From: PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samplesPathoReport module workflow. The PathoReport module outputs two report files including: (1) a tab-delimited (.tsv) report that contains a ranked list of genomes (with proportions) identified by the pipeline; and (2) an XML file containing detailed results including the reads assigned to each genome, contigs constructed from overlapping reads, and so on.Back to article page