Figure 4From: PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samplesPathoID module workflow. The PathoID utilizes a penalized statistical mixture model to reassign ambiguous reads to the most likely source genome. The PathoID module also includes performance improvements to the originally published reassignment approach (PathoScope 1.0), by allowing users to calibrate prior information, better utilize alignment scores, and by including reference length and read alignment quality into the reassignment.Back to article page