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Table 1 Richness comparisons between pipelines

From: LotuS: an efficient and user-friendly OTU processing pipeline

 

LB

LR

QDN

QRE

MOT

s_obs

119.2243

118.6378

243.1324

201.8838

119.0432

Chao1

142.314

141.8862

473.0673

273.9279

151.7102

Evenness

0.778795

0.778613

0.752087

0.807766

0.763974

Shannon

3.698957

3.690516

4.128862

4.253904

3.627188

  1. Average diversity and richness estimates for the five methods to derive an OTU matrix, rarefied to 2,000 reads per samples. LB LotuS BLAST, LR LotuS RDP, QDN QIIME de novo OTU creation, QRE QIIME reference OTU picking, MOT mothur.
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Microbiome

ISSN: 2049-2618

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