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Table 3 Table presenting significant p values obtained from MaAsLin2 differential abundance analysis for unstratified data from HUMAnN3

From: Early life exposure of infants to benzylpenicillin and gentamicin is associated with a persistent amplification of the gut resistome

Feature

Antibiotic

Coef

p value

PWY.7211..superpathway.of.pyrimidine.deoxyribonucleotides.de.novo.biosynthesis

Yes

961.594

0.00019

PPGPPMET.PWY..ppGpp.biosynthesis

Yes

759.515

0.00064

PWY.6545..pyrimidine.deoxyribonucleotides.de.novo.biosynthesis.III

Yes

750.848

0.00117

CATECHOL.ORTHO.CLEAVAGE.PWY..catechol.degradation.to..beta..ketoadipate

Yes

194.333

0.00614

PROTOCATECHUATE.ORTHO.CLEAVAGE.PWY..protocatechuate.degradation.II..ortho.cleavage.pathway

Yes

278.919

0.00382

PWY.5181..toluene.degradation.III..aerobic…via.p.cresol

Yes

218.475

0.00547

PWY.5417..catechol.degradation.III..ortho.cleavage.pathway

Yes

246.549

0.00621

PWY.5431..aromatic.compounds.degradation.via..beta..ketoadipate

Yes

246.549

0.00621

PWY.5855..ubiquinol.7.biosynthesis..prokaryotic

Yes

359.876

0.00680

PWY.5856..ubiquinol.9.biosynthesis..prokaryotic

Yes

359.876

0.00680

PWY.5857..ubiquinol.10.biosynthesis..prokaryotic

Yes

359.876

0.00680

PWY.6318..L.phenylalanine.degradation.IV..mammalian..via.side.chain

Yes

320.314

0.00409

PWY.6562..norspermidine.biosynthesis

Yes

68.1263

0.00334

PWY.6708..ubiquinol.8.biosynthesis..prokaryotic

Yes

359.876

0.00680

PWY.7210..pyrimidine.deoxyribonucleotides.biosynthesis.from.CTP

Yes

638.424

0.00441

PWY0.1297..superpathway.of.purine.deoxyribonucleosides.degradation

Yes

937.509

0.00576

PWY.6182..superpathway.of.salicylate.degradation

Yes

190.901

0.00862

ECASYN.PWY..enterobacterial.common.antigen.biosynthesis

Yes

380.688

0.01017

P185.PWY..formaldehyde.assimilation.III..dihydroxyacetone.cycle

Yes

453.982

0.01145

PWY.7199..pyrimidine.deoxyribonucleosides.salvage

Yes

918.564

0.01226

  1. MaAsLin2 was run using default parameters using min_abundance = 0.00 and min_prevalance = 0.01 with antibiotic as a fixed-effect and sample as random effect