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Table 4 Correct ARG association with a bacterial genus based on the assembly path score

From: MGS2AMR: a gene-centric mining of metagenomic sequencing data for pathogens and their antimicrobial resistance profile

Genus

Top score (%)a

Plasmid (%)b

Odds ratioc

Acinetobacter

94.9

25.7

1.133

Enterobacter

83.6

59.4

1.452

Enterococcus

97.4

47.1

0.760

Escherichia

88.2

66.2

1.257

Klebsiella

89.3

60.8

1.402

Pseudomonas

88.2

9.1

3.288

  1. aThe percentage of cases in which an ARG known to belong to the mixed-in bacterium has the top path score assigned by MGS2AMR
  2. bThe percentage of cases where ARG are estimated to originate from plasmids
  3. cThe odds ratio an ARG originates from a plasmid or not when the known genus is not the top prediction
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Microbiome

ISSN: 2049-2618

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