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Table 3 Top bacterial genera found in the background metagenomes

From: MGS2AMR: a gene-centric mining of metagenomic sequencing data for pathogens and their antimicrobial resistance profile

Bacterial genus

Average total

path score

Prevalence (%)

Bacteroides

21,193.82

88

Barnesiella

13,564.08

91

Riemerella

12,962.68

87

Lachnospiraceae

12,665.01

89

Prevotella

12,599.36

92

Proteus

12,248.33

76

Enterobacter

12,243.81

83

Parabacteroides

11,924.01

85

Clostridium

11,409.35

92

Streptococcus

11,208.43

85

  1. The sample background is defined as bacterial genera present in the results of MGS2AMR after excluding the genus of the mixed-in bacterium. The total path score is the sum of all ARG path scores for a particular genus in a given sample. The average path score is used to rank overall genus presence across all analyzed samples. The prevalence is the percentage of samples reportedly containing the genus
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Microbiome

ISSN: 2049-2618

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