From: Metagenomic and metatranscriptomic inventories of the lower Amazon River, May 2011
Reference genome | Phylum | Mean transcripts L−1 | Mean genes L−1 | Mean % of transcripts | Mean % of genes | Genome sizea | PA genome equivalents L−1 | FL genome equivalents L−1 | Total genome equivalents L−1 |
---|---|---|---|---|---|---|---|---|---|
Actinobacterium SCGC AAA027-L06 | Actinobacteria | 4.84 × 109 | 4.97 × 1011 | 11.2 | 7.1 | 1244 | 1.92 × 108 | 2.08 × 108 | 4.00 × 108 |
Schlesneria paludicola | Planctomycetes | 1.30 × 109 | 1.51 × 1011 | 1.7 | 2.5 | 7033 | 1.71 × 107 | 4.41 × 106 | 2.15 × 107 |
Polynucleobacter necessarius asym. | Betaproteobacteria | 1.55 × 109 | 1.49 × 1011 | 1.1 | 1.3 | 2077 | 4.19 × 107 | 2.73 × 107 | 6.91 × 107 |
Candidatus Solibacter usitatus Ellin6076 | Acidobacteria | 1.16 × 109 | 1.44 × 1011 | 1.4 | 0.9 | 7998 | 1.31 × 107 | 5.53 × 106 | 1.86 × 107 |
Pedosphaera parvula | Verrucomicrobia | 2.00 × 109 | 1.16 × 1011 | 1.0 | 1.2 | 6510 | 1.25 × 107 | 5.36 × 106 | 1.79 × 107 |
Niastella koreensis GR20-10 | Bacteriodetes | 1.04 × 109 | 1.12 × 1011 | 2.7 | 1.4 | 7136 | 9.54 × 106 | 6.09 × 106 | 1.56 × 107 |
Ilumatobacter coccineum YM16-304 | Actinobacteria | 4.44 × 108 | 1.10 × 1011 | 0.2 | 1.2 | 4233 | 1.56 × 107 | 1.04 × 107 | 2.60 × 107 |
Candidatus Nitrospira defluvii | Nitrospirae | 1.44 × 109 | 7.42 × 1010 | 0.7 | 0.3 | 3938 | 1.45 × 107 | 4.34 × 106 | 1.88 × 107 |
Betaproteobacterium CB | Betaproteobacteria | 5.38 × 108 | 7.27 × 1010 | 0.5 | 0.4 | 2034 | 2.11 × 107 | 1.46 × 107 | 3.57 × 107 |
Opitutus terrae PB90-1 | Verrucomicrobia | 6.94 × 108 | 6.75 × 1010 | 0.4 | 0.5 | 4612 | 7.61 × 106 | 7.04 × 106 | 1.46 × 107 |
Sum | 1.50 × 1010 | 1.49 × 1012 | 20.8 | 16.8 | 6.38 × 108b |