Table 1 Percent of vertices opened with pruning compared to no pruning with the corresponding length and count
From: Xander: employing a novel method for efficient gene-targeted metagenomic assembly
Prune cutoff/kmer length | Length 30 | Length 45 | ||
|---|---|---|---|---|
Count 1a | Count 2b | Count 1a | Count 2b | |
No pruning (# opened * 106) | 2325 | 55.8 | 17.7 | 9.2 |
Prune 5 (% opened) | 1.55 | 16.53 | NA | NA |
Prune 10 (% opened) | 2.66 | 25.09 | NA | NA |
Prune 15 (% opened) | 6.34 | 29.28 | NA | NA |
Prune 20 (% opened) | 11.58 | 31.86 | 10.7 | 6.5 |