From: A comprehensive evaluation of multicategory classification methods for microbiomic data
Classifier | Best FS Method | CBH | CS | CSS | FS | FSH | BP | PDX | PBS | Averages | P values |
---|---|---|---|---|---|---|---|---|---|---|---|
SVM, Linear C = 1 | SVM-RFE | 0.900 | 0.941 | 0.610 | 0.965 | 0.719 | 0.524 | 0.558 | 0.759 | 0.747 | 0.319* |
SVM, Linear optimized C | SVM-RFE | 0.952 | 0.935 | 0.631 | 0.985 | 0.754 | 0.534 | 0.553 | 0.761 | 0.763 | 0.535* |
SVM, Poly | SVM-RFE | 0.950 | 0.929 | 0.633 | 0.987 | 0.742 | 0.528 | 0.551 | 0.754 | 0.759 | 0.460* |
SVM, RBF | SVM-RFE | 0.941 | 0.918 | 0.617 | 0.987 | 0.693 | 0.518 | 0.523 | 0.727 | 0.741 | 0.179* |
KRR, Poly | KW | 0.909 | 0.933 | 0.623 | 0.949 | 0.749 | 0.547 | 0.514 | 0.713 | 0.742 | 0.199* |
KRR, RBF | KW | 0.929 | 0.939 | 0.634 | 0.970 | 0.737 | 0.537 | 0.504 | 0.714 | 0.745 | 0.248* |
KNN, K = 1 | RFVS2 | 0.930 | 0.760 | 0.563 | 0.971 | 0.623 | 0.421 | 0.443 | 0.596 | 0.663 | 0.011 |
KNN, K = 5 | RFVS2 | 0.930 | 0.724 | 0.529 | 0.943 | 0.656 | 0.434 | 0.434 | 0.609 | 0.657 | 0.009 |
KNN, optimized K | RFVS2 | 0.935 | 0.754 | 0.552 | 0.963 | 0.648 | 0.422 | 0.432 | 0.620 | 0.666 | 0.011 |
PNN | RFVS2 | 0.906 | 0.781 | 0.560 | 0.956 | 0.623 | 0.130 | 0.449 | 0.604 | 0.626 | 0.006 |
L2-LR, C = 1 | ALL | 0.934 | 0.939 | 0.628 | 0.982 | 0.628 | 0.380 | 0.515 | 0.725 | 0.716 | 0.047 |
L2-LR, optimized C | KW | 0.921 | 0.948 | 0.650 | 0.836 | 0.739 | 0.499 | 0.464 | 0.711 | 0.721 | 0.089* |
L1-LR, C = 1 | RFVS1 | 0.922 | 0.818 | 0.589 | 0.968 | 0.706 | 0.449 | 0.395 | 0.687 | 0.692 | 0.020 |
L1-LR, optimized C | RFVS1 | 0.934 | 0.909 | 0.611 | 0.993 | 0.710 | 0.442 | 0.418 | 0.697 | 0.714 | 0.048 |
RF, default | RFVS1 | 0.954 | 0.950 | 0.704 | 0.991 | 0.745 | 0.550 | 0.479 | 0.746 | 0.765 | - |
RF, optimized | RFVS1 | 0.954 | 0.950 | 0.695 | 0.996 | 0.746 | 0.548 | 0.479 | 0.741 | 0.764 | 0.498* |
BLR, Laplace priors | SVM-RFE | 0.946 | 0.929 | 0.639 | 0.991 | 0.759 | 0.521 | 0.537 | 0.739 | 0.758 | 0.465* |
BLR, Gaussian priors | KW | 0.926 | 0.856 | 0.557 | 0.980 | 0.728 | 0.525 | 0.426 | 0.701 | 0.713 | 0.043 |